I just purchased the Magnaflow Catback Exhaust System and they advertise a gain of 10HP. I was at Magnaflow when they tested this exhaust out on the Dyno so I know it did what they say. I am not sure why the TRD system is making less but I would assume its because of restrictions they put on the muffler being its from Toyota? Magnaflow is now making the TRD mufflers for them maybe I can ask my friend and see if they have certain restrictions built in to the ones they sell to TRD.
Also, just because TRD is a good company doesnt mean everything they put out is the best. No company is 100% right in everything they do. Look at the TRD shocks you can pay extra for on Tacomas, they are total $h!t. TRD is a part of Toyota so they are going to want to keep cost down because of the volume they put out. That is why the TRD Bilstein shocks are such crap because Bilstein was ordered to produce them at a lower standard. I assume this is probably part of the cause for the TRD exhausts to produce less.
Something else to consider if I would bet TRD/Toyota is more concerned with passing CA emissions than some other companies might so that could also be why they are setup a certain way.
Ofcourse I could be totally wrong