There is no such thing as "Exhaust break-in"
Heat cycles DO NOT tune an exhaust system.

There is in fact "Muffler Blow-in" and "Muffler blow-out" common in fiber/ceramic fiber filled mufflers.Only exception is stainless steel wool.
The two primary causes of "exhaust droan" are reflection and or
"hot-spots" due to tubing transitions.
Common in/with most "kits" their droan is caused by heat building at the sound baffles,plates,panels or what ever and they then compound with the tubing transitions causing magnification of reflection resonance known as droan.